02:15:01 *** synthasee has quit (Read error: 104 (Connection reset by peer)) 04:16:52 *** jas3 has quit () 04:30:17 *** CrimsonScythe has quit ("Leaving...") 04:52:57 *** biopunk has quit () 05:10:42 \o 06:36:40 pingou, prolly 06:36:58 2.6.18-92.1.6.el5PAE #1 SMP Wed Jun 25 14:21:46 EDT 2008 i686 i686 i386 GNU/Linux 06:42:09 ^^ 06:54:23 _dan, I see your 454 06:54:37 (using my intergoggles) 06:54:47 which Bioc packages are you using? 07:23:16 <_dan> faceface: not really had a chance to assess them yet, our 454 users are still quite low volume and not really outstripping the requirements of the supplied software (well not much anyway) 07:23:58 *** clarezoe has quit ("暂离") 07:25:45 _dan, cool 07:26:06 which would you use ;-D 07:26:47 For example, I saw a talk about gene model fitting using EM and sequence copy number data... 07:26:59 anything like that in BioC? 07:27:55 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 07:34:47 *** faceface has quit (Remote closed the connection) 09:19:37 Gel image... naturally enriched in proteins... 09:50:42 *** highvoltz has quit () 10:46:19 *** Lynx_ has quit (Read error: 110 (Connection timed out)) 11:39:52 *** jimjim (n=dbolser@bioinformatics.org) has joined #bioinformatics 11:40:05 hello? 11:40:22 sorry... first time in epic 11:40:50 f3 keeps killing gnome (and therefore x) 11:41:02 *** jimjim is now known as faceface 11:41:19 ne ircii users? 12:08:35 I'm looking at some 'ABI' data (not sure of the machine), and I found a bunch of .b and .g files under a directory called 'chromat'. Are these chromatography files? How should I read them? 12:45:01 *** kanzure has quit (Connection reset by peer) 12:45:37 *** kanzure (n=bryan@adsl-75-36-170-160.dsl.pltn13.sbcglobal.net) has joined #bioinformatics 12:45:49 hi kanzure 12:51:09 notify pingou 12:51:14 doh 12:51:35 so should I be running this within emacs? 12:58:45 ^^ 12:59:10 faceface: you pinged ? 13:14:28 *** kanzure has quit (Connection reset by peer) 13:16:07 *** kanzure (n=bryan@adsl-75-36-170-160.dsl.pltn13.sbcglobal.net) has joined #bioinformatics 13:18:06 from the verb to ping... ^^ 13:24:07 * _dan wants to see the conjugation of that in french... 13:24:47 je ping tu pings il ping nous pingons vous pingez ils pinguent :p 13:27:45 _dan: pv ? 13:43:50 pingou, I was trying to type /notify pingou 13:44:05 which basically means I get to spy on you from within ircii (epic) 13:44:18 but I ended up saying just 'notify pingou' which sounds weird 13:44:25 it does ^^ 13:45:13 me pingeded 13:45:30 do you use ircii? 13:46:11 b'cause of screen ? 13:46:26 anyone familiar with running an apache 'reverse proxy'? 13:46:30 and because it allows me to leave the client open 13:46:46 pingou cool... but how do I switch channels? 13:47:00 faceface, I am 13:47:00 faceface: how do you configure foxyproxy when using ssh -D ? 13:47:31 faceface: alt+1 - 2 - 3 ... or alt + arrow left-right 13:47:34 flu, I have a problem that the first apache serves up pages on the second apache (directory listings and the like) - however they are absolute links 13:48:18 so when I click on the link, the url gets 'confused' 13:48:25 let me try to give an example... 13:49:56 http://outward.faceing.server/xxx shows up what we have on http://internal.server:5345/ 13:50:40 going into a directory on http://internal. 13:50:44 +server:5345/ 13:51:06 works, but 'parent directory' points to http://outward.faceing.server not http://outward.faceing.server/xxx 13:52:07 wait... I should have said "going into a directory on http://outward.faceing.server/xxx" works, but 'parent directory' points to http://outward.faceing.server not http://outward.faceing.server/xxx 13:52:11 " 13:53:07 Sounds like a ProxyPassReverse problem...have you set any? 13:53:42 flu the thing is that I didn't configure the reverse proxy 13:54:00 so I can only work with the internal server 13:54:22 ahh, well that complicates things :-) 13:55:16 I can talk to the guy who did... perhaps its necessary to find out what he did at least... I assume he is using mod_proxy with reverse proxying using ProxyPass 13:55:51 But I'm not even sure how to test that 13:56:56 *** dbolser (n=dbolser@bioinformatics.org) has joined #bioinformatics 13:57:13 *** dbolser has parted #bioinformatics () 13:57:16 I'm trying to think this through...I usually only deal with identical proxies. In your case however, the entire internal site is being mirrored under a different path externally which complicates things. 13:57:35 * pingou goto home 13:57:46 pingou... 13:57:50 _dan: identify yourself I have a couple of links to send you ;) 13:57:52 your commands dont work for me 13:58:05 alt+arrow ? 13:58:16 O3C 13:58:18 O3D 13:58:26 I just get that output 13:58:32 Oo 13:58:38 gnome-term ? 13:58:46 yeah 13:58:54 hm strange 13:59:04 but with some ... no actually... I was going to say modifications 13:59:13 ^^ 13:59:13 nm... you can go home ;-) 13:59:31 alt+number works ? 13:59:37 nope 13:59:41 I still have a couple of min 13:59:56 what the hell did you break ? 14:00:05 (again ! :p) 14:00:11 ;) 14:00:28 me? 14:00:38 in my gnome-terminal the alt+number does not always work 14:00:38 I didn't touch it! 14:00:50 but at least the alt+left/right arrow does 14:00:51 I just see numbers 14:00:59 or codes 14:01:10 stop watching matrix :p 14:01:34 I'm reverse matrix 14:01:41 faceface: let's investigate that tomorrow ;) 14:01:45 'd luck :p 14:01:54 take care 14:02:04 ++ 14:02:24 flu, identical proxies? 14:02:47 where / on the external proxy maps to / on the internal machine 14:02:52 same file system on both servers? OK 14:03:11 I'm fairly certain that the front end proxy needs a config option change 14:03:43 yeah... this way screws up all the absolute URL... I was trying to fix it with a rewrite rule.. 14:03:56 something like this ProxyPass /xxxx/ http://internal.server:5345/ 14:04:38 that is my guess... 14:04:50 if you use cookies it will also need a Reverse cookie path config option 14:04:53 http://httpd.apache.org/docs/2.2/mod/mod_proxy.html#proxypassreversecookiepath 14:05:57 mod_proxy_html? 14:06:34 that is only useful for filtering static content 14:07:02 flu, but I dont' think proxypassreverse is doing the job 14:07:32 you could use it to fix this problem but it is better fixed with a proper reverse proxy setup 14:08:43 sometimes the only way to track down these problems is to bump up the logging level of the front end apache and your internal one. 14:08:49 how would I do that? 14:09:15 http://httpd.apache.org/docs/2.0/mod/core.html#loglevel 14:09:49 is that a hint ;-) 14:10:20 should be in your config somewhere...where exactly depends on if you are using a distro version or a source compiled one. 14:12:26 <_dan> pingou: identify myself? Do you have recipes for me? :) 14:14:16 *** ybit has quit (Read error: 104 (Connection reset by peer)) 14:14:33 *** h2i (n=h@unaffiliated/ybit) has joined #bioinformatics 14:16:17 flu, I'll just put everything into xxxx on the backend server :-) 14:18:32 dam... it still doesn't work... unless apache is doing something clever with symbolic links 14:20:39 so the apache directory listing is now using the right path but the internal hostname? 14:21:01 no... its all screwed up 14:21:08 oh ok :-) 14:21:12 ;-) 14:21:59 especially because its php (MW) on the other end, and that has some 'issues' with URLs 14:32:09 *** kanzure has quit (Connection reset by peer) 14:35:17 *** kanzure (n=bryan@adsl-75-36-170-160.dsl.pltn13.sbcglobal.net) has joined #bioinformatics 15:29:25 Hey faceface. 15:29:31 yo 15:30:01 you called? 15:30:34 Just to test ircii tbh 15:30:40 why won't useradd work? 15:46:19 I think I'll go back to xchat... 16:51:38 *** h2i is now known as ybit 17:09:19 *** synthase (n=synthase@c-69-243-225-6.hsd1.al.comcast.net) has joined #bioinformatics 18:07:33 *** spaes (n=username@c-71-224-187-134.hsd1.pa.comcast.net) has joined #bioinformatics 18:08:51 hey can anyone recommend an interesting paper for a compbio journal club to discuss? any suggestions appreciated 18:09:37 *** synthasee (n=synthase@68.35.210.194) has joined #bioinformatics 18:17:52 *** spaes has quit ("Leaving.") 18:18:32 *** spaes (n=username@c-71-224-187-134.hsd1.pa.comcast.net) has joined #bioinformatics 18:23:44 *** synthase has quit (Read error: 110 (Connection timed out)) 18:25:28 *** spaes has quit ("Leaving.") 18:38:31 *** mercutio22 (n=htorres@189-68-104-250.dsl.telesp.net.br) has joined #bioinformatics 18:57:06 *** mercutio22 has quit (Read error: 104 (Connection reset by peer)) 19:17:19 *** levitation_ has quit (leguin.freenode.net irc.freenode.net) 19:17:24 *** levitation_ (n=levitati@noorus.aklubi.ee) has joined #bioinformatics 19:27:29 *** levitation_ has quit (leguin.freenode.net irc.freenode.net) 19:43:28 *** levitation_ (n=levitati@noorus.aklubi.ee) has joined #bioinformatics 19:43:31 *** levitation_ has quit (Connection timed out) 20:08:57 *** ybit has quit (Read error: 104 (Connection reset by peer)) 20:13:21 *** levitation[A] (n=levitati@noorus.aklubi.ee) has joined #bioinformatics 20:16:23 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 20:27:36 *** ybit has quit (Read error: 104 (Connection reset by peer)) 20:41:08 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 21:18:58 *** ybit has quit (Connection timed out) 21:20:10 *** spaes (n=username@c-71-224-187-134.hsd1.pa.comcast.net) has joined #bioinformatics 21:39:52 *** spaes has quit ("Leaving.")