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04:52:59 <pingou> hi
04:53:04 <kanzure>  No.
04:53:31 <pingou> yes :)
04:53:55 <pingou> yes and no in fact :)
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06:32:09 <faceface> hi
06:32:22 <faceface> kanzure, ?
06:36:42 <pingou> hi faceface 
06:37:09 <pingou> hi faceface 
06:37:18 <pingou> arf wrong tab
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07:15:32 <kanzure> Hey Dan.
08:04:35 <faceface> yo p
08:04:38 <faceface> hey kanzure 
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11:40:34 <Lynx_> hey!
11:40:39 <pingou> hoi
11:41:14 <Lynx_> would anyone know of a script / tool that i can use for in silico pcr checking? like the one ncbi has on their site. basically i just want blasted primers checked for potential pcr product generation.
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11:41:33 <Lynx_> and, umm, am too lazy to write that part myself ;)
11:42:18 <pingou> http://www.ncbi.nlm.nih.gov/projects/primer-blast/ ?
11:42:35 <_dan> mvn install
11:42:39 <_dan> no
11:42:40 <_dan> no
11:42:48 <_dan> IRC does not respond to maven commands
11:43:01 <pingou> too bad _dan 
11:43:04 <pingou> :)
11:43:20 <Lynx_> pingou: yeah, exaclty like that, but i want to run it locally
11:43:34 <pingou> Lynx_: primer3 ?
11:44:00 <Lynx_> pingou: yeah, i use primer3 to find the primers, but then i want to blast them against the genome to make sure there will be only one product
11:44:34 <Lynx_> so i really just need a script that compares the hits for the primers against each other and decides if they are close enough for a pcr to work
11:45:04 <Lynx_> i don't think ncbi makes theirs available, at least i could not find it on the ftp site
11:45:27 <pingou> hm I think you could work on the website through perl
11:45:44 <pingou> would a local blast make it ?
11:46:13 <Lynx_> yes, the blast is not my problem, it is the processing of the results
11:47:04 <Lynx_> hmm, one can request the software for the UCSC In-Silico PCR
11:47:16 <Lynx_> maybe i'll just do that and see how they do it
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