02:10:19 *** Biopunk (n=p@h213n1c1o261.bredband.skanova.com) has joined #bioinformatics 02:20:25 *** Splicer has quit (Read error: 110 (Connection timed out)) 02:47:32 kanzure: chekc 02:47:34 check 02:47:45 (I mean I got that one listed already ;-) 02:48:04 faceface: Who the hell are these guys and why didn't I know about them? 02:48:27 They have a Google Maps API + SQL + AJAX interface for the human cortex gene expression dataset. 02:48:50 with a squirrely query language to "325 million triples of RDF data from bioinformatics" 02:49:01 http://hcls.deri.ie/hcls_demo.html 02:49:11 http://hcls.deri.ie/deri_presentation.pdf 02:49:20 http://esw.w3.org/topic/HCLS/Banff2007Demo?action=AttachFile&do=get&target=Banff2007Part2.pdf 02:49:30 http://tinyurl.com/ysqm3z 02:50:20 http://nif.nih.gov/Slides/ScienceCommons%40NIF20071018.pdf 02:50:47 ah, and http://www.w3.org/TR/2008/NOTE-hcls-kb-20080604/ 02:51:20 where did they get the tripples? 02:51:49 geneSequenceAminoAcidAtPos(genexyz, 101, Alanine)... 02:51:54 " The underlying triplestore contains over 325 million RDF triples of biomedical information. The information covers a large array of biomedical knowledge: from basic molecular biology over literature annotation up to anatomy and physiology. " 02:52:11 I think it's integrated from the different databases 02:52:24 sounds right 02:52:42 kanzure: I'll have to look in more detail later 02:52:47 it's peculiar 02:53:03 stinky NFS disks here are soooo sloooo... (and I should be working ;-) 02:53:08 peculiar? 02:54:55 hrm... looks like I didn't have that one linked... its not the site I was expecting... http://en.scientificcommons.org 02:55:02 kanzure: cool 02:55:53 talking of peculiar, has anyone tried wikiproteins? 02:56:16 I think its great if you really really really want to reference your reference your reference... but otherwise a bit overly complex. 03:00:08 scientific commons is not the same thing 03:00:11 http://sciencecommons.org/ 03:00:15 http://creativecommons.org/ 03:00:44 wikiproteins would be ok if it wasn't so static 03:00:49 a wiki should just be a git repository 03:01:02 while allowing anyone to automatically push updates to the generated text 03:01:09 if it can only be done via clicking, then it's wasted overhead 03:28:41 *** svensko`laptop has quit (Remote closed the connection) 03:55:42 kanzure: agreed 03:55:51 hm 03:56:13 do I want to do a radio show? 04:31:08 *** nordlicht (n=nordlich@141.53.70.85) has joined #bioinformatics 05:05:17 kanzure: why not? 05:05:26 any imagemagic hackers here? 05:05:28 hm 05:05:36 how to merge two images to make them side by side? 05:05:37 I've played with it 05:05:40 hrm 05:05:54 svg might have something actually 05:05:56 I want to extract pages from two ps's and make a side by side animated gif 05:06:16 PS page => image 1, image 2, map them on to an SVG screen => GIF 05:06:19 I can make the gif from the pages easily... convert my.ps -rotate 90 my.gif 05:06:21 but there is probably a one-step command 05:06:57 kanzure: the above does fine for a single ps -> gif, but I want to merge 2 ps'es into one gif... the man is +v! 05:08:11 faceface: commonly I find myself just writing to an image buffer in my scripts 05:08:40 create the full sized image file, then paste the first one, then paste the second one 05:08:41 easy enough 05:09:02 http://search.cpan.org/~jcristy/PerlMagick-6.40/Magick.pm 05:09:53 hi 05:13:33 kanzure: actually firfox is much beter than im at *displaying* gifs ... I'll just make a webpage with both gifs in it 05:13:35 yo p! 05:13:39 wsup? 05:16:33 life's great :) 05:16:36 you ? 05:16:41 cool :D 05:16:49 got a persentation today ... 05:17:04 about ? 05:17:34 oh ... the stuff I have been doing recently... its a bit half baked but I have lots to present 05:17:48 you ever heard of geometric reconstruction or distance geometry? 05:18:13 its a way of converting an arbitrary set of 'distance constraints' into a 3d 'reconstruction' (of a protein) 05:18:20 hm i have done some geometry some time ago ^^ but I am not sure it is the same thing ^^ 05:18:40 hm it is for sure not the same thing ^^ 05:21:25 sounds cool 05:22:25 its kinda fun... we are playing with the idea that some sets of constraints are 'more informative' than others, and using a GA to seek them out 05:23:26 what kinds of constraints could make such difference ? 05:37:55 *** CrimsonScythe has quit ("Leaving...") 06:08:04 *** synthase has quit (Client Quit) 06:53:07 <_dan> morning 06:53:16 hi _dan 06:55:55 <_dan> update_mygrid 06:55:57 <_dan> oops 06:55:58 <_dan> ww 07:31:47 *** faceface has quit (Remote closed the connection) 07:46:06 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 09:48:47 *** vimes656 has quit () 09:53:49 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 10:18:02 *** highvoltz has quit () 10:57:23 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 10:58:23 *** highvoltz has quit (Client Quit) 10:59:17 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 11:19:45 *** clarezoe has quit ("暂离") 11:33:10 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 11:50:36 *** Biopunk has quit () 12:49:54 *** highvoltz has quit () 12:54:49 *** nordlicht has quit ("Verlassend") 12:55:53 *** oss (n=hb@125.211.134.108) has joined #bioinformatics 12:59:11 *** oss has quit (Client Quit) 13:50:48 *** clarezoe has quit (Remote closed the connection) 13:52:07 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 14:22:32 *** jm|earth (n=jm@p57B9EA9B.dip.t-dialin.net) has joined #bioinformatics 15:29:02 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 15:39:38 *** rogers (i=rogers@bling.bling.org) has joined #bioinformatics 15:39:58 *** highvoltz has quit (Remote closed the connection) 17:35:16 *** CrimsonScythe (n=CrimsonS@unaffiliated/crimsonscythe) has joined #bioinformatics 17:47:53 *** rogers has quit () 18:10:47 *** toru (n=gioby@81-208-83-234.fastres.net) has joined #bioinformatics 18:14:22 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 18:30:47 *** gotgenes (n=chris@hc6521dd9.dhcp.vt.edu) has joined #bioinformatics 18:58:13 *** toru has quit ("Ex-Chat") 18:58:28 *** toru (n=gioby@81-208-83-234.fastres.net) has joined #bioinformatics 19:21:35 *** gotgenes has quit ("I am a meat popsicle.") 19:39:15 *** toru has quit ("Ex-Chat") 19:59:36 *** vimes656_ (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 19:59:36 *** vimes656 has quit (Read error: 104 (Connection reset by peer)) 20:23:01 *** vimes656_ has quit () 20:24:24 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 20:24:59 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 20:25:59 *** vimes656 has quit (Read error: 104 (Connection reset by peer)) 20:27:01 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 20:37:55 *** synthasee (n=synthase@68.63.20.12) has joined #bioinformatics 20:45:26 *** vimes656 has quit (Read error: 110 (Connection timed out)) 20:47:28 *** synthase has quit (Connection timed out) 21:13:53 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 21:14:14 *** svensko`laptop (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 21:23:06 *** synthasee has quit (Read error: 110 (Connection timed out)) 21:39:47 *** spaes (n=username@c-24-5-55-238.hsd1.ca.comcast.net) has joined #bioinformatics 21:43:10 I did an REU program last summer with Iowa State, I just graduated from San Jose State, and I will be starting at Pitt/Carnegie Mellon next month... anyone have an idea of which school I should put for myself if I am presenting work from the REU program later this month? 21:43:27 *** Splicer (n=p@h88n2c1o261.bredband.skanova.com) has joined #bioinformatics 21:52:05 REU progam? 21:59:27 kanzure: Research Experience for Undergrads 22:00:01 Neat. 22:09:56 *** clarezoe has quit (leguin.freenode.net irc.freenode.net) 22:09:56 *** ybit has quit (leguin.freenode.net irc.freenode.net) 22:10:12 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 22:10:20 *** clarezoe (n=clarezoe@193.11.243.247) has joined #bioinformatics 22:18:32 spaes: at the insitution where you did your work 22:18:44 well 22:18:49 ask your advisor actually 22:19:11 when I was an undergrad I used my formal affiliation to present work I did at another institution 22:19:53 which advisor? 22:20:21 from undergrad i guess? 22:20:54 yeah, iowa state was going to put down san jose state.. 22:21:13 (the first author who is doing the poster is at iowa state) 22:22:24 weird academic stuff, my only question is that i graduated so i am no longer enrolled/affiliated 22:22:29 *** jm|earth has quit (Read error: 110 (Connection timed out)) 22:29:49 *** ybit has quit (Remote closed the connection) 22:31:08 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 22:34:28 *** svensko_ (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 22:43:07 spaes: yeah go with sj state then 22:43:13 no when you did the work you were affiliated with them 22:44:38 *** svensko has quit (Read error: 110 (Connection timed out)) 22:45:20 *** svensko`laptop has quit (Read error: 110 (Connection timed out)) 22:52:34 *** ybit has quit (Remote closed the connection) 22:52:47 *** svensko (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 23:06:50 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 23:09:39 *** ybit has quit (Client Quit) 23:22:04 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 23:23:33 *** CrimsonScythe has quit ("Leaving...")