00:15:01 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 00:33:13 *** convivial (n=convivia@c-98-226-60-25.hsd1.il.comcast.net) has joined #bioinformatics 00:33:16 hi! 00:40:19 *** vimes656 has quit () 00:51:50 *** convivial has parted #bioinformatics () 00:57:37 *** convivial (n=convivia@c-98-226-60-25.hsd1.il.comcast.net) has joined #bioinformatics 00:57:41 hi 00:57:50 wna build biomachines 00:57:54 wanna build biomachines 00:57:58 bio nano machines 00:58:05 i was told I don't need format edu 00:58:10 so i'm gonna go at it! 00:59:17 *** craigoz (n=craigo@202.63.56.72) has joined #bioinformatics 00:59:37 kanzure, says that open medicine is the future! I shall trust him and just solve the problems! 01:00:37 I gonna do it guys! 01:09:59 O_O 03:12:11 *** convivial has parted #bioinformatics () 04:24:46 hi 04:45:39 *** Splicer has quit () 06:42:19 *** torbjorn has quit (Read error: 101 (Network is unreachable)) 06:55:54 *** torbjorn (n=torbjorn@195.159.113.30) has joined #bioinformatics 08:19:31 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 08:20:31 *** vimes656 has quit (Read error: 104 (Connection reset by peer)) 08:20:45 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 09:37:04 *** Narrenschiff (n=ritchie@xolotl.plus.com) has joined #bioinformatics 09:39:10 *** Narrenschiff_ (n=ritchie@xolotl.plus.com) has joined #bioinformatics 09:43:35 *** Narrenschiff has quit (Nick collision from services.) 09:43:49 *** Narrenschiff_ is now known as Narrenschiff 10:42:11 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 10:59:14 *** faceface (n=chatzill@bioinformatics.org) has joined #bioinformatics 11:02:30 *** _dan has quit ("leaving") 11:07:12 *** _dan (n=dan@shady.org) has joined #bioinformatics 11:28:59 *** _dan has quit ("leaving") 11:32:18 *** _dan (n=dan@shady.org) has joined #bioinformatics 12:30:13 *** craigoz has quit (Read error: 60 (Operation timed out)) 12:58:51 *** mercutio22 has quit () 13:05:51 *** gotgenes (n=chris@hc6521dd5.dhcp.vt.edu) has joined #bioinformatics 14:18:20 <_dan> faceface: seen this? http://tinyurl.com/5q7txv 14:18:45 * _dan cordially invites you all to : http://friendfeed.com/rooms/the-life-scientists 14:23:52 _dan: ? 14:23:57 _dan != faceface? 14:27:16 affirmative 14:27:32 <_dan> :) 14:27:37 <_dan> 2 dan's 14:27:56 _dan: I apologize if I've been talking to you before as if you're faceface. 14:27:57 ;-) 14:28:14 <_dan> well i can't say I had noticed, so no worries ;) 15:15:24 Faceface never seems to be aboot these days. 15:22:36 then give him the boot 15:25:13 *** vimes656 has parted #bioinformatics () 16:34:54 Hey, any quick recommendations on Entrez gene ID-to-name resolution? 16:35:01 preferably the three-letter name 16:37:37 <_dan> how many do you want to do? 16:37:55 <_dan> I cheat and use DAVID for things like that these days providing it's <2000 16:38:01 <_dan> http://david.abcc.ncifcrf.gov/conversion.jsp 16:43:27 I could scrape http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=4974 I guess. 16:43:30 the last number is the ID. 16:43:48 I have "a lot". 16:43:55 it's either 190 or 570 of them 16:43:57 hey, that's less than 2k :) 16:43:58 hurray 16:46:04 *** vimes656_ (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 16:50:37 Is there a way that I can get the Entrez gene view page in XML? 16:50:46 I really, really don't want to have to scrape silly tables and HTML 16:50:51 http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=Graphics&list_uids=4974 16:50:56 * kanzure needs to get "OMG" from this page 16:52:35 ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz 16:55:59 kanzure, sure curl "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=4974&retmode=xml" 16:56:49 http://www.ncbi.nlm.nih.gov/entrez/query/static/efetch_help.html 16:56:55 Thank you. 17:09:13 *** vimes656_ has quit () 17:35:17 *** Narrenschiff has quit () 17:42:46 *** highvoltz has quit () 18:01:00 *** gotgenes has quit ("I am a meat popsicle.") 18:43:43 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 19:42:42 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 19:48:23 *** Splicer (n=p@h239n2c1o261.bredband.skanova.com) has joined #bioinformatics 19:57:08 *** vimes656 has quit () 20:00:57 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 20:04:59 *** vimes656 has quit (Read error: 60 (Operation timed out)) 20:12:02 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 20:43:28 *** vimes656 has quit () 20:50:03 faceface: http://sciencecommons.org/