00:14:25 *** mercutio22 has quit () 00:47:04 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics 01:10:24 *** synthase has quit (Read error: 110 (Connection timed out)) 01:10:31 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 01:50:07 *** synthase has quit (Read error: 110 (Connection timed out)) 01:50:26 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 02:04:10 *** kanzure has quit (Remote closed the connection) 02:50:40 *** synthase has quit (Connection timed out) 02:50:57 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 03:00:40 *** Cawiss (n=uzumaki@85.103.138.14) has joined #bioinformatics 03:11:39 *** svensko`laptop has quit (Remote closed the connection) 03:37:31 *** Pthag has quit (Read error: 110 (Connection timed out)) 04:30:26 *** Pthag (n=pthag@i-194-106-48-136.freedom2surf.net) has joined #bioinformatics 04:57:59 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 05:07:48 *** Splicer (n=p@h57n2c1o261.bredband.skanova.com) has joined #bioinformatics 05:13:23 *** CrimsonScythe has quit ("Leaving...") 05:19:17 *** Biopunk has quit (Read error: 110 (Connection timed out)) 05:29:14 *** nordlicht (n=nordlich@141.53.70.85) has joined #bioinformatics 05:56:04 *** vimes656_ (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 06:14:03 *** vimes656 has quit (Read error: 110 (Connection timed out)) 06:23:52 *** vimes656_ has quit () 06:29:05 *** Cawiss has quit (Read error: 104 (Connection reset by peer)) 06:29:06 *** Cawiss_ (n=uzumaki@85.103.138.14) has joined #bioinformatics 06:34:44 *** Pthag has quit (Read error: 110 (Connection timed out)) 06:44:10 *** Biopunk (n=p@h26n2c1o261.bredband.skanova.com) has joined #bioinformatics 06:57:25 *** Splicer has quit (Read error: 110 (Connection timed out)) 07:05:38 *** Splicer (n=p@h139n1c1o261.bredband.skanova.com) has joined #bioinformatics 07:06:36 *** Biopunk has quit (Read error: 110 (Connection timed out)) 07:41:50 *** Biopunk (n=p@h136n2c1o261.bredband.skanova.com) has joined #bioinformatics 07:49:58 *** toru_ (n=gioby@137.204.142.219) has joined #bioinformatics 07:53:55 *** Splicer has quit (Read error: 110 (Connection timed out)) 08:08:27 *** synthase has quit (Read error: 110 (Connection timed out)) 08:09:36 *** foldr (n=pf@ida08.inf.uni-konstanz.de) has joined #bioinformatics 08:29:21 *** Cawiss_ has quit (Read error: 104 (Connection reset by peer)) 08:31:39 *** Cawiss (n=uzumaki@85.103.138.14) has joined #bioinformatics 08:58:08 *** toru_ has quit (Read error: 104 (Connection reset by peer)) 09:02:37 *** toru (n=gioby@137.204.142.219) has joined #bioinformatics 09:13:13 *** Cawiss has quit ("Leaving") 09:44:30 *** Biopunk has quit () 09:51:28 random question from a silly computer scientist who wishes to learn about biology: is the codon->amino acid correspondence table the same in all organisms? 09:53:14 and are there factors that can affect the association between codons and aminos? (I'm guessing temperature...) 09:59:21 *** highvoltz has quit () 10:24:35 *** vimes656 (n=vimes656@80.36.242.181) has joined #bioinformatics 10:44:52 foldr: of course not :) 10:45:17 http://www.kazusa.or.jp/codon/ 10:45:37 the second question, I didn't understand 10:51:29 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 11:11:51 <_dan> foldr: you're talking about codon usage bias I suspect 11:11:53 <_dan> http://en.wikipedia.org/wiki/Codon_usage_bias 11:32:46 I may be mistaken, but it seems as though that link only discusses variation in the use of codons that code for the same amino acid (preference of UUU over UUC for phe for example). What I actually was wondering about is whether the codon->amino acid correspondence is the same in all organisms (it seems like http://en.wikipedia.org/wiki/Codon#Variations_to_the_standard_genetic_code is what I wanted) 11:33:02 thanks for the links :) 11:33:31 (sorry for the delays, biology is my procrastination from actual work...) 12:02:14 *** nbarr (n=nbarr@213.162.13.162) has joined #bioinformatics 12:03:50 foldr: no, look at http://www.kazusa.or.jp/codon/ 12:05:38 in any case no, many micro-organisms and fungii use a different genetic code 12:05:57 moreover, mitocondrial code is different than genomic one 12:06:38 that means that the same codon can code for a different aa in different organisms and between cell and mitocondrium 12:43:17 *** Pthag (n=pthag@i-194-106-48-136.freedom2surf.net) has joined #bioinformatics 13:15:08 *** highvoltz has quit () 13:31:45 k, thanks for the info 13:33:27 *** Pthag has quit (Connection timed out) 13:39:39 *** toru has quit ("Ex-Chat") 13:43:45 *** Pthag (n=pthag@i-194-106-48-136.freedom2surf.net) has joined #bioinformatics 14:02:08 *** svensko has quit (leguin.freenode.net irc.freenode.net) 14:05:59 *** svensko (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 14:11:41 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 14:19:18 *** nordlicht has quit ("Verlassend") 14:50:07 *** Pthag has quit (Read error: 110 (Connection timed out)) 15:47:58 *** pingou (i=4f552a97@gateway/web/ajax/mibbit.com/x-37af1e1a0208945b) has joined #bioinformatics 15:52:48 *** vimes656 has quit (Remote closed the connection) 15:53:28 *** vimes656 (n=vimes656@181.Red-80-36-242.staticIP.rima-tde.net) has joined #bioinformatics 15:55:17 good evening people ! :) 15:55:52 haha I see that R joined us :D 15:55:58 thanks torbjorn ;) 16:20:26 *** Pthag (n=pthag@i-194-106-48-136.freedom2surf.net) has joined #bioinformatics 16:31:31 *** pingou has quit ("http://www.mibbit.com ajax IRC Client") 17:29:26 *** ybit has quit (Remote closed the connection) 17:30:22 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 17:38:40 *** highvoltz has quit () 17:39:26 *** svensko`laptop (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 18:20:28 *** mercutio22 (n=htorres@c9515180.virtua.com.br) has joined #bioinformatics 18:42:09 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 18:49:57 *** Splicer (n=p@h231n2c1o261.bredband.skanova.com) has joined #bioinformatics 18:59:06 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 19:27:14 *** svensko has quit (Remote closed the connection) 19:28:23 *** svensko (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 19:39:56 *** svensko has quit (Remote closed the connection) 19:42:00 *** svensko (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 19:43:24 *** svensko has quit (Remote closed the connection) 19:45:18 *** highvoltz has quit () 19:45:26 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 19:49:25 *** svensko (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 19:53:44 *** mercutio22 has quit () 20:46:09 *** vimes656 has parted #bioinformatics () 21:05:57 *** highvoltz has quit () 21:26:39 *** synthase has quit (Connection timed out) 21:26:49 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 21:54:34 *** synthasee (n=synthase@68.63.20.12) has joined #bioinformatics 21:59:09 *** synthase has quit (Connection timed out) 22:57:23 *** mercutio22 (n=htorres@c9515180.virtua.com.br) has joined #bioinformatics