00:06:47 *** l880 (n=OvEr@217.54.69.240) has joined #bioinformatics 00:07:57 *** l880 has parted #bioinformatics () 00:30:11 *** vimes656 (n=vimes656@122.167.81.201) has joined #bioinformatics 01:02:27 *** vimes656_ (n=vimes656@122.167.81.201) has joined #bioinformatics 01:21:38 *** vimes656 has quit (Read error: 110 (Connection timed out)) 01:27:14 *** vimes656_ has quit () 01:37:55 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics 01:53:24 *** vimes656 (n=vimes656@203.200.58.142) has joined #bioinformatics 02:37:25 *** kanzure has quit (Remote closed the connection) 03:15:09 *** CowbertD1 (n=cowbert@c2.8d.5646.static.theplanet.com) has joined #bioinformatics 03:15:35 *** CowbertDH has quit (Read error: 104 (Connection reset by peer)) 03:16:17 *** Splicer has quit () 03:39:30 *** vimes656 has quit (Read error: 113 (No route to host)) 03:52:58 *** vimes656 (n=vimes656@203.200.58.142) has joined #bioinformatics 04:12:40 *** facefaceface is now known as faceface 04:24:08 *** vimes656_ (n=vimes656@203.200.58.142) has joined #bioinformatics 04:42:02 *** vimes656 has quit (Read error: 113 (No route to host)) 04:54:57 good morning people :) 05:03:00 *** ybit has quit (Read error: 104 (Connection reset by peer)) 05:03:34 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 05:04:49 *** synthase has quit (Read error: 60 (Operation timed out)) 05:04:58 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 05:13:29 *** toru (n=gioby@81-208-83-234.fastres.net) has joined #bioinformatics 05:44:52 *** synthase has quit (Read error: 110 (Connection timed out)) 05:45:04 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 05:47:36 *** toru has quit ("Ex-Chat") 06:05:53 <_dan> morning all 06:06:20 morning _dan 06:07:04 <_dan> flu: I'm assuming that's 'Thinking in Java'? I have grabbed that cheers :) 06:08:33 <_dan> I have an 'unfinished' copy of a C# book in the same style I think from the same author when I had a brief flirtation with it recently 06:20:32 *** synthase has quit (Read error: 110 (Connection timed out)) 06:54:23 anyone ssh master? 06:55:07 here in Germany I want to use the BBCi player... I can use an ssh box 'out there' as an http proxy by using 'ssh -D 12345 me@somehost' 06:55:31 that allows me to use 'localhost:12345' as a proxy in firefox, and I can then browse as if I am me@somehost 06:56:01 i.e. if somehost has an IP addresse whthin a certain range, I can browse certain journals 06:56:23 I can browse on localhost, using the proxy... 06:57:16 I want to use the same trick to browse bbci content... however, the UK institution that I have an ssh account with have some 'restrictions' on their DMZ box... namely, that box can't see the internet from inside 06:57:37 Oo 06:57:41 so I figure... set up a DPort proxy on that DMZ box, then set up port forwarding from localhost to the DMZ... 06:57:46 simple eh? 06:57:53 pingou: man ssh is your lifelong friend :D 06:58:03 * pingou reads 06:58:12 see ya in 3 months 06:58:17 ;-) 06:58:27 Read options for -L / -R and -D 06:58:49 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 06:58:58 for example, my local institution blocks all traffic on the IRC port... how can this be you say, cus I is in IRC right now... 06:59:10 don't they all bind ? 06:59:24 I simply run this ssh command on the local machine "ssh -D 23456 dmb@bioinformatics.org" 06:59:25 same here... 06:59:36 then I set up proxying in IRC to look at localhost:23456 06:59:39 ssh + screen + irssi 06:59:56 pingou: ahhh... the crude but effective way ;-) 07:00:04 ^^ 07:00:19 keep it short and simple as used to say my english teacher ^^ 07:00:27 I could ssh onto the remote box and view webpages with links... the point is that I want to use my local firefox / irc / whatever but iwth proxying set up 07:00:57 pingou: what could be more simple than "ssh -D 23456 dmb@bioinformatics.orgW 07:01:00 pingou: what could be more simple than "ssh -D 23456 dmb@bioinformatics.org" 07:01:10 ssh screen irssi :D 07:01:24 all you have to do then is configure xchat with the appropriate proxy info... 07:01:33 hm sounds nice 07:01:36 but pingou, xchat > irssi 07:01:41 sure ! 07:01:55 :D 07:02:18 try it... assuming you have a shell account ... which you obviously do... just modify your ssh command as described 07:02:34 you don't need to kill the current ssh connection 07:02:41 a shell account on bioinformatics.org ? no I don ^^ 07:02:50 +'t 07:02:52 use whatever it is you are using right now 07:02:56 k 07:03:08 assuming they dont specifically prohibit -D functionality... 07:03:12 (most ppl don't) 07:04:20 ssh dont 07:04:22 done* 07:04:29 got xchat? 07:04:38 yes 07:04:51 I am looking on the preferences 07:05:13 set up the proxy as SOCKS(5) host = localhost port = 23456 (or whatever you passed to -D) 07:06:02 *** pingou_laptop (n=Pingou@AMontsouris-152-1-13-47.w82-123.abo.wanadoo.fr) has joined #bioinformatics 07:06:03 :D 07:06:21 well done faceface !! 07:06:25 I like it !! 07:07:39 hey! 07:08:02 you can also use proxy in firefox to browse the internet as if on 'the other machine' 07:08:26 which as I said is very usefull for browsing certain journal sites from certain institutional logins.... 07:08:29 nice trick indeed 07:08:37 hm ^^ 07:08:55 you are giving me ideas ^^ 07:08:56 pingou in firefox you should install the 'foxyproxy' extension, as the standard proxy config is rubbish 07:09:06 me? no? I would never! 07:09:49 Foxy proxy also works with chatzilla :D (I am using that now) I set up a patter that matches irc://* and use the dport to bioinformatics.org 07:10:47 soo... so far so goood... but now I want to browse the internet as if I am in the UK... and I have this 'DMZ' issue... 07:10:54 any takers? 07:13:42 I wonder if its blocked 07:27:45 *** rogers (i=rogers@bling.bling.org) has joined #bioinformatics 07:35:46 *** highvoltz has quit (Remote closed the connection) 08:07:29 * _dan hearts proxies 08:10:22 <_dan> it's rumoured that a lot of places that have 'prepay wifi' often allow traffic out to port 53 before you've fessed up with cash to get access to port 80 08:10:41 <_dan> but who needs access to other ports when you're happily proxying anyway :) 08:17:05 <_dan> faceface: 08:17:07 <_dan> oops 08:17:35 <_dan> faceface: is there any way i can get mediawiki to run arbitrary code snippets to generate content for a page? 08:17:45 <_dan> i know there's a php extension 08:17:55 <_dan> but it looks like the worlds biggest vulnerability 08:28:21 *** toru has quit (Read error: 104 (Connection reset by peer)) 08:28:49 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 08:28:50 i know 2 tools for mediawiki, one that mount it in the FS, and pywikimedia 08:29:16 maybe the FS one could help you to run your script and allow generate the content _dan 08:29:23 *** toru has quit (Read error: 104 (Connection reset by peer)) 08:34:16 <_dan> pingou: the mediawiki fs thing might just work 08:34:19 <_dan> thanks 08:37:53 no pb :) 08:38:05 _dan: http://wikipediafs.sourceforge.net/ 08:38:13 never used though :/ 08:38:26 faceface: did you ? 08:46:54 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 08:48:21 *** vimes656 (n=vimes656@203.200.58.142) has joined #bioinformatics 08:49:45 *** toru has quit (Read error: 104 (Connection reset by peer)) 08:50:15 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 08:50:42 never used mwfs (yet) ... I need to get gmail fs set up first ;-) 08:50:43 *** toru has quit (Read error: 104 (Connection reset by peer)) 08:50:52 _dan: that is good info! 08:51:20 _dan: you want the snippet 'under the hood'? or entered onto a page? 08:51:52 _dan: i.e. do you want to run teh php every time, or you just want to build a bunch of content in a batch 09:05:55 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 09:06:38 *** vimes656_ has quit (Read error: 113 (No route to host)) 09:08:15 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 09:13:51 <_dan> faceface: the latter not the former 09:14:02 <_dan> again it's our mres student running into issues daily ;) 09:14:17 * _dan assumes its the latter anyway 09:14:31 <_dan> she writes particularly vague emails for help 09:35:27 *** toru has quit (Remote closed the connection) 10:09:07 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 10:11:17 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 10:13:15 *** rogers has quit () 10:51:51 *** svensko`laptop has quit (Remote closed the connection) 10:53:34 _dan: write back with just a single '?' 10:54:22 er... the former is a matter of exploring the 'extension' functionality, and then writing an extension to plug in at exactly the right moment in the MediaWiki ... thing 10:55:05 change your name and tell her to join this chan ;-) 10:59:53 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 12:02:26 <_dan> ok well i found out what she wants to do 12:02:48 <_dan> and it's effectively implementing a decision tree as far as I can tell 12:03:18 <_dan> I can't think of any other way to do it than precomputing the options and then using mediawikifs to write out the results 12:03:26 <_dan> but it should work for her 12:03:27 <_dan> I think 12:03:35 <_dan> she wont come on here 12:03:42 <_dan> she has to be bullied to ask me for help 12:03:46 <_dan> and im nice and friendly 12:03:49 <_dan> and local 12:03:56 <_dan> there's no way she will talk to strangers ;) 12:12:48 * pingou has an idea... 12:13:23 what about using the biomoby world ? 12:14:05 We were thinking with a friend of my to create chain of boimoby services to create a worldiest helle world =) 12:14:18 (yes sorry it is friday afternoon you know...) 12:14:52 so there would be a list of services each adding a letter to the string H E L L O all around the world =) 12:26:52 *** synthase has quit (Connection timed out) 12:30:49 *** vimes656 has quit () 12:34:35 *** toru has quit (Remote closed the connection) 12:52:35 *** pingou_laptop has quit (Remote closed the connection) 13:06:47 that pingou... 13:09:17 _dan: do you have mwfs working? 13:09:36 we were thinking of trying it here as a replacement for pywikipediabot 13:22:02 *** Narrenschiff (n=ritchie@mo-rsmitha21.op.umist.ac.uk) has joined #bioinformatics 13:33:07 *** CowbertD1 is now known as CowbertDH 14:38:09 *** highvoltz has quit () 14:49:11 *** vimes656 (n=vimes656@122.167.91.125) has joined #bioinformatics 14:51:47 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 14:59:53 *** salvooo (n=aa@78.13.136.15) has joined #bioinformatics 15:00:00 hi 15:01:12 hello 15:03:46 achoo! 15:04:54 *** vimes656 has quit () 15:06:31 CowbertDH, what is the DH suffix for? 15:12:27 *** clarezoe has quit (Read error: 113 (No route to host)) 15:17:54 flu: "designated hitter" 15:21:14 *** vimes656 (n=vimes656@122.167.91.125) has joined #bioinformatics 15:21:51 and who are you hitting for? 15:24:19 *** Narrenschiff has quit () 16:12:41 *** toru (n=gioby@81-208-83-234.fastres.net) has joined #bioinformatics 17:12:56 flu: no, my shell is a dedicated server 17:12:59 dedicated host 17:29:47 *** vimes656 has quit () 18:07:26 faceface: you do not like my idea ?? :/ 18:07:31 :"( 18:38:45 faceface: for the job offer in dundee... they ask for 3 referees... I don't have them... 18:41:52 why not? 18:42:44 get 2 advisors and some other faculty member 18:43:45 I asked my supervisor from my thesis he replied ="We commonly do not write recommendation letters, but potential employees 18:43:49 may always contact me via email." 18:54:35 but I could still ask other people true 18:54:39 thanks CowbertDH :) 18:59:36 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 19:27:03 *** kanzure (i=bryan@wireless-128-62-141-219.public.utexas.edu) has joined #bioinformatics 19:34:48 *** toru has quit ("Ex-Chat") 19:39:09 faceface: we got spam again 19:41:36 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 19:53:01 arf too late... my rss seems to be a bit slow 20:17:42 *** kanzure has quit (Read error: 110 (Connection timed out)) 20:19:41 *** toru (n=gioby@81-208-83-234.fastres.net) has joined #bioinformatics 21:20:26 *** salvooo has quit () 21:30:13 *** synthase has quit (Read error: 110 (Connection timed out)) 21:30:28 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 21:52:17 *** toru has quit ("Ex-Chat") 22:00:42 *** synthase has quit (Connection timed out) 22:01:11 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 22:26:47 *** synthase has quit (Read error: 110 (Connection timed out)) 22:27:02 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 22:43:35 *** svensko`laptop (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 23:00:21 *** synthase has quit (Read error: 110 (Connection timed out)) 23:00:23 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 23:23:09 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics