00:33:33 Is there a genral biotech board on the web? 00:35:49 i found one specialized in sequencers.... but is there one on molecular bilology? 00:36:40 Yes. 00:36:44 http://heybryan.org/forums.html 00:36:49 Look near the middle of the page, I think. 00:36:55 thanks 00:36:57 Also, look for the word 'bio' or 'mol'. 00:37:04 Yep. ;-) 00:38:18 perfect.. thanks 00:40:16 Splicer: If you want the RSS feeds for all of them, http://heybryan.org/bookmarks/ there's an OPML file that I generated last week. 00:40:23 I have something like 60,000 unread posts. 00:58:43 well.. the weekend is coming up 02:13:20 *** synthase has quit (Connection timed out) 02:13:29 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 03:03:53 *** vimes656 (n=vimes656@203.200.58.133) has joined #bioinformatics 03:04:42 *** berry_nl (n=berry@5356D1F5.cable.casema.nl) has joined #bioinformatics 03:22:21 *** kanzure has quit (Remote closed the connection) 04:44:40 *** pingou (n=pierrey@AMontsouris-152-1-18-245.w82-123.abo.wanadoo.fr) has joined #bioinformatics 04:44:44 Hi :) 05:23:32 *** olas (n=olas@farmjw088.farmbio.uu.se) has joined #bioinformatics 05:34:35 hey pingou 05:35:47 *** synthase has quit (Read error: 110 (Connection timed out)) 05:36:51 *** Splicer has quit () 06:09:56 *** nbarr (n=nbarr@213.162.13.162) has joined #bioinformatics 07:17:52 *** vimes656 has quit () 07:24:36 Hey!!! we have our first edit war!!! http://pdbwiki.org/index.php/1krq 07:24:52 I wonder if the person who left that comment will come back to reply to my reply... 07:25:13 this PDB wiki appears to be full of ignorant comments by people who arfe incapable of understanding biology!! 07:25:27 (exclamation added) 07:38:03 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 07:50:57 hi people 07:51:21 I have to create a web interface to a simple mysql database. Do you recommend any particular tool or script? 07:55:42 php or ruby on rails 07:55:54 or (if it is very simple) PHPMyAdmin 07:57:29 no... I mean, if there is any library or framework I could re-use 07:57:42 I was thinking of some plone application 07:59:09 plone? 07:59:29 it's a zope-python based framework 07:59:32 toru: I remember something on b ioinforamtics.org 07:59:33 OK 07:59:34 cms 07:59:50 ok thanks :) 07:59:52 it it pipet even? 08:00:35 ? :o 08:00:35 no matches found in db 08:01:46 R? 08:01:54 when did you come in here? 08:02:07 not sure if it is pipet 08:02:58 ?%cgi% 08:03:01 output too long, uploaded to http://scsys.co.uk:8001/16095 08:04:13 ?bioconductor 08:04:14 no matches found in db 08:04:21 ?%bio% 08:04:23 output too long, uploaded to http://scsys.co.uk:8001/16098 08:04:55 ?Bioconductor 08:04:56 no matches found in db 08:06:21 toru: I can't put my finger on it 08:07:39 uh... what does it means 'it is pipet even'? :) 08:20:10 is the 'thing on bioinforamtics.org' that 'I remember' Pipet... no it isn't 08:21:48 I think I was thinking of something in EMBOSS... but it does what Pipet does, not what you want. 08:22:26 toru: how much development time do you have for this project? 08:23:15 ah ok :) 08:23:19 well, a few months 08:23:52 some people told me well about django 08:33:21 looks good... but I don't see any database stuff... 08:34:03 anyway... I was going to suggest that you build something using MediaWiki 08:34:14 i.e. an SQL extension for MW 08:44:42 Django's primary goal is to ease the creation of complex, database-driven websites. 08:44:58 yeah it's true 08:45:03 cool 08:45:08 it doesn't look too bad 08:45:38 if its RAD, lets see what you got by this time tomorrow ;-) 08:47:59 eheh 08:48:17 it seems it is one of those framework where you wrote code mixed to html: http://www.djangoproject.com/documentation/tutorial04/ 09:12:01 I see 09:34:06 *** highvoltz has quit () 09:50:37 *** toru has quit ("Ex-Chat") 09:59:04 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 10:42:20 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 10:43:54 *** toru (n=gioby@137.204.142.89) has joined #bioinformatics 10:45:08 django is a good solution, specially if you are going to create a database 10:45:45 if you are using a pre-existant database, it's possible to use it, but it's not so straightforward 10:48:02 faceface: if you need help with django, let me know. I have experience with it 10:48:25 nbarr: cool. I think toru will be hands on with it though 10:48:51 thank you nbarr 10:49:02 ok :) 10:49:11 yes, I see, it seems to be easier to use when creating a new database 10:49:17 yes 10:50:03 Is there any way to create a modules.py file from an existing database schema, or from an UML diagram? 10:50:12 the good thing about it is it helps you create the database easier, and with few lines of code (basically class Admin: pass), it gives you a fully functional admin interface to it 10:50:19 models.py, sorry :) 10:50:28 and a very user friendly too 10:50:31 mmm 10:50:38 I don't know any... 10:50:40 yes, I saw the Admin:pass thing 10:50:44 but there should be 10:50:50 yes, it is possible 10:51:06 it could be 10:51:34 here it is: http://www.djangoproject.com/documentation/legacy_databases/ 10:51:36 anyway, the module I have to create is very small 10:51:38 enjoy :) 10:51:47 thanks :) 10:51:58 you have enough info there to create a model from a database 10:52:18 if all works well, you'll have the admin site up and running in 10 minutes :) 10:52:37 it doesn't seems too difficult: just manage.py inspectdb 10:52:44 exactly 10:53:04 well, now I have to create the database schema, the code and the applications! 10:53:46 :) 10:54:05 yes, that doesn't come already made :D 11:07:02 eheh 11:07:05 too bad not :) 11:19:16 *** synthase has quit (No route to host) 11:20:28 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 11:55:05 *** synthase has quit (Connection timed out) 11:57:19 *** clarezoe has quit ("暂离") 12:11:02 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 12:13:40 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 13:20:03 *** synthase has quit (Read error: 110 (Connection timed out)) 13:49:34 *** highvoltz has quit () 14:09:43 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 14:10:02 *** acmguest187 (i=[U2FsdGV@centaur.acm.jhu.edu) has joined #bioinformatics 14:13:33 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 14:17:08 *** acmguest187 has quit ("CGI:IRC (EOF)") 14:34:12 *** toru has quit ("Ex-Chat") 15:12:32 *** olas has quit (Read error: 110 (Connection timed out)) 15:38:58 *** ybit has quit (Read error: 104 (Connection reset by peer)) 16:25:06 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 16:26:31 *** clarezoe has quit (Read error: 104 (Connection reset by peer)) 16:29:07 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 16:30:17 *** ybit has quit (Read error: 104 (Connection reset by peer)) 16:30:33 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 17:09:08 *** berry_nl has quit ("Ex-Chat") 17:32:50 *** clarezoe has quit (Remote closed the connection) 17:33:46 *** highvoltz has quit () 17:50:21 *** ybit has quit (Remote closed the connection) 17:51:13 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 17:51:49 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 17:53:49 *** ybit has quit (Remote closed the connection) 18:29:57 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 18:57:40 *** synthase (n=synthase@68.63.20.12) has joined #bioinformatics 20:59:11 *** svensko has quit (Remote closed the connection) 21:01:35 *** svensko (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 22:02:35 *** Splicer (n=p@h184n2c1o261.bredband.skanova.com) has joined #bioinformatics 22:41:31 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 22:42:02 *** ybit has quit (Read error: 104 (Connection reset by peer)) 22:45:41 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 22:50:35 *** ybit has quit (Remote closed the connection) 22:53:11 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 23:07:07 *** ybit has quit (Remote closed the connection) 23:07:44 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 23:09:47 *** ybit has quit (Remote closed the connection) 23:15:29 *** ybit (n=h@unaffiliated/ybit) has joined #bioinformatics 23:57:21 *** ybit has quit (Read error: 110 (Connection timed out))