00:26:00 *** ChanServ has quit (leguin.freenode.net irc.freenode.net) 00:26:53 *** ChanServ (ChanServ@services.) has joined #bioinformatics 01:14:30 *** kanzure has quit (leguin.freenode.net irc.freenode.net) 01:18:29 *** torbjorn has quit (leguin.freenode.net irc.freenode.net) 01:20:55 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics 01:21:25 *** kanzure has quit (Read error: 104 (Connection reset by peer)) 01:22:15 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics 01:24:21 *** torbjorn (n=torbjorn@195.159.113.30) has joined #bioinformatics 04:05:49 *** kanzure has quit ("Leaving.") 05:06:06 *** synthase has quit (Read error: 110 (Connection timed out)) 09:02:02 *** synthase (n=synthase@69.254.170.145) has joined #bioinformatics 10:11:55 *** highvoltz has quit () 10:40:25 *** nordlicht (n=nordlich@141.53.70.85) has joined #bioinformatics 10:55:17 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 11:02:53 *** rogers (i=rogers@bling.bling.org) has joined #bioinformatics 11:08:05 *** highvoltz has quit (Remote closed the connection) 11:13:49 *** Lynx_ (n=lynx@tina-10-4.genetik.uni-koeln.de) has joined #bioinformatics 11:13:58 hey! 11:14:45 can someone tell me whether it makes sense to calculate a neighbourhood joining tree with an aligments that contains a few seqs that are shorter than others? or should I truncate alle seqs to the length of the shortest one? 12:22:10 *** synthase has quit (Read error: 110 (Connection timed out)) 13:01:39 *** faceface has quit ("Bye, and thanks... probably.") 13:08:29 *** nordlicht has quit ("Verlassend") 13:46:15 *** wastrel has quit (Read error: 110 (Connection timed out)) 13:51:05 *** kanzure (i=bryan@dhcp-146-6-213-183.icmb.utexas.edu) has joined #bioinformatics 14:30:57 *** breinbaas has quit (Remote closed the connection) 15:02:22 kanzure: I do all my structure stuff in VMD. 15:02:30 I'm pretty biased, though. 15:02:48 If you're working with cryo-EM data, Chimera is probably the way to go. 15:08:00 Hrm. 15:08:44 *** Narrenschiff (n=ritchie@xolotl.plus.com) has joined #bioinformatics 16:03:55 *** Narrenschiff has quit () 16:18:10 *** breinbaas (i=er@xs7.xs4all.nl) has joined #bioinformatics 17:13:06 *** kanzure has quit (Connection timed out) 17:45:43 *** rogers has quit () 17:55:07 *** gotgenes (n=chris@hc6521def.dhcp.vt.edu) has joined #bioinformatics 18:26:27 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 19:47:49 *** kanzure (i=bryan@dhcp-146-6-213-183.icmb.utexas.edu) has joined #bioinformatics 19:51:49 *** kanzure has quit (Client Quit) 20:20:11 *** synthasee (n=synthase@69.254.170.145) has joined #bioinformatics 20:49:41 *** gotgenes has quit ("I am a meat popsicle.") 21:53:39 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics 21:53:44 *** kanzure has quit (Read error: 104 (Connection reset by peer)) 22:09:01 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics 23:41:51 *** svensko (n=svensko@cpe-071-068-240-183.sc.res.rr.com) has joined #bioinformatics 23:42:18 does anyone know of any public databases that have the sequences for several genes for several individuals within a population? 23:42:30 and preferably several populations within the species? 23:44:03 *** clarezoe (n=clarezoe@clarezoe.csbnet.se) has joined #bioinformatics 23:52:18 Hrm. There has to be something like that for the mutation databases or something, right? 23:52:23 Although those aren't natural populations. 23:52:54 i'm basically just looking for information to fill up sample databases to test some perl stuff on 23:53:15 currently teaching myself SQL and now trying to put it to use... although the functions are being quite a pain in the rear 23:53:40 am i correct in assuming that regular expressions play a huge role in bioinformatics 23:54:52 oh yes :) 23:55:01 * kanzure is not familiar with regexps in MySQL 23:55:04 oops 23:55:05 figured as such 23:55:06 in SQL in general :) 23:55:13 yeah, the pgsql documentation goes over it, but does a terrible job imo 23:55:20 but I do play with them from time to time, very instrumental in bioinformatics 23:55:25 heh 23:55:33 perldoc or perltut regexps does a good job, I hear 23:55:40 i've understood 99% of the things in this documentation except for that, i'm guessing they assume you have previous experiene with it 23:57:14 i'll have to look into that 23:57:38 i'm starting to feel overwhelmed with this stuff quite honsetly, maybe i just need more practice but i feel like it's hard putting the big picture together when incorperating all that i'm trying to learn