01:30:59 *** synthase (n=synthase@69.254.170.145) has joined #bioinformatics 01:40:35 *** synthasee has quit (Read error: 110 (Connection timed out)) 04:22:35 *** Four0913 (n=Nasal3@74-138-166-205.dhcp.insightbb.com) has joined #bioinformatics 04:24:30 *** Four0913 has quit (Remote closed the connection) 05:41:02 *** synthase has quit (Connection timed out) 09:51:56 *** synthasee (n=synthase@69.254.170.145) has joined #bioinformatics 10:07:02 *** highvoltz has quit (Client Quit) 10:48:35 *** synthasee has quit (Read error: 113 (No route to host)) 10:49:32 *** synthasee (n=synthase@69.254.170.145) has joined #bioinformatics 10:51:00 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 10:52:56 *** synthasee has quit (Read error: 104 (Connection reset by peer)) 10:53:09 *** synthasee (n=synthase@69.254.170.145) has joined #bioinformatics 10:59:45 *** synthase (n=synthase@69.254.170.145) has joined #bioinformatics 11:14:20 *** synthasee has quit (Read error: 110 (Connection timed out)) 11:26:28 *** synthasee (n=synthase@69.254.170.145) has joined #bioinformatics 11:32:32 *** synthase has quit (Read error: 113 (No route to host)) 12:13:30 *** kanzure has quit ("Leaving.") 12:44:04 *** rogers (i=rogers@bling.bling.org) has joined #bioinformatics 12:52:29 *** highvoltz has quit (Remote closed the connection) 12:53:36 *** rogers has quit (Remote closed the connection) 12:55:40 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 13:16:52 *** synthasee has quit (Connection timed out) 14:08:52 *** gotgenes (n=chris@pool-71-171-44-20.nwrknj.east.verizon.net) has joined #bioinformatics 14:31:16 *** gotgenes has quit (Read error: 110 (Connection timed out)) 15:02:32 *** faceface has quit (Nick collision from services.) 15:02:44 *** faceface (n=dan@p57A0E1C8.dip.t-dialin.net) has joined #bioinformatics 15:02:49 any sge experts? 15:03:02 *** facefaceface (n=chatzill@bioinformatics.org) has joined #bioinformatics 15:18:40 *** deeku (n=telppa@h199-182.wlan.ucalgary.ca) has joined #bioinformatics 15:20:20 *** Narrenschiff (n=ritchie@mo-rsmitha21.op.umist.ac.uk) has joined #bioinformatics 15:22:37 facefaceface face! 15:23:27 *** deeku has quit (Client Quit) 15:26:10 *** Narrenschiff has quit () 15:44:07 faceface, I use sge, whats up? 16:22:23 *** ybit has quit (Connection timed out) 16:50:21 flu, we have two queues for the same cluster of nodes, one which forces 'one job per node' and one for all other jobs. I am running jobs on the former queue, but with low priority. However, everyone else is on the other queue with normal priority. My jobs don't have anyone else to compete with on the former queue, so get submitted along with every one else (priority only seems to work within one queue). 17:32:38 how do I keep my jobs at a lower priority over both queues? 17:33:57 *** ybit (n=u1@unaffiliated/ybit) has joined #bioinformatics 17:40:41 *** highvoltz has quit (Client Quit) 17:48:45 are you submitting them via qsub or the DRMAA api? 17:51:09 *** kanzure (i=bryan@dhcp-146-6-213-183.icmb.utexas.edu) has joined #bioinformatics 17:51:27 *** kanzure has quit (Read error: 104 (Connection reset by peer)) 18:07:31 short of specifying the job priority at submit time I'm not quite sure how you would do this. Have you had a look through the mailing list? http://gridengine.sunsource.net/servlets/SearchList?listName=users&by=date 18:08:10 there are a few promising hits when searching under 'job priority' but its hard for me to tell if it would apply to your specific use case. 18:31:06 *** highvoltz (i=rogers@bling.bling.org) has joined #bioinformatics 18:34:58 thanks flu 18:35:06 I'll have a look at the mailing list 18:35:20 I am using qsub with -q 1000 (very low priority) 18:35:44 or is it "-n" 18:36:27 anyway, the problem is that the queue I am using is 'low traffic', so they get executed... actually we don't know if the cluster is cpu or io bound... 18:36:46 thanks for help... I'll be around tomorrow 18:36:48 *** faceface has quit ("So long, and thanks... (probably).") 19:47:20 *** synthasee (n=synthase@69.254.170.145) has joined #bioinformatics 19:58:17 *** synthase (n=synthase@69.254.170.145) has joined #bioinformatics 20:07:32 *** synthasee has quit (Connection timed out) 20:07:39 *** kanzure (n=bryan@cpe-70-113-54-112.austin.res.rr.com) has joined #bioinformatics 23:23:47 *** gotgenes (n=chris@pool-72-66-192-71.ronkva.east.verizon.net) has joined #bioinformatics 23:55:55 *** gotgenes_ (n=chris@pool-72-66-192-71.ronkva.east.verizon.net) has joined #bioinformatics 23:56:18 *** gotgenes has quit (Nick collision from services.) 23:56:34 *** gotgenes_ is now known as gotgenes